WormBase Tree Display for Variation: WBVar00115185
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| WBVar00115185 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115185 | ||||
| Other_name | cbs50706 | |||||
| HGVSg | chrIII:g.8365895A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | gtggggaagtaaaagaatcgacaatcttctctactgcccgaactcaatgg | tgctcttccatcttcggctcttcccaatattcttcatgcatcttattggg | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 575 170 155 63 37 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 758 242 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 786 214 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 758 242 | ||||
| CAC | HindI | 112 109 101 96 92 72 53 49 47 41 41 39 29 18 17 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 267 156 140 137 86 69 60 43 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 501 141 119 84 67 49 39 | ||||
| GAWTC | TfiI | 446 199 140 86 69 60 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 418 170 157 155 63 37 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 499 259 242 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 664 336 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 582 214 204 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 499 259 242 | ||||
| CAC | HindI | 109 101 96 92 72 62 53 50 49 47 41 41 39 29 18 17 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 267 223 156 140 69 60 43 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 550 141 119 84 67 39 | ||||
| GAWTC | TfiI | 532 199 140 69 60 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031280 | ||||
| WBGene00031281 | ||||||
| Transcript | CBG09750.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09750.1:c.*2066A>C | |||||
| cDNA_position | 2515 | |||||
| Exon_number | 9/18 | |||||
| CBG09750.2 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09750.2:c.*2066A>C | |||||
| cDNA_position | 2515 | |||||
| Exon_number | 9/17 | |||||
| CBG09751.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09751.1:c.2018T>G | |||||
| HGVSp | CBP48050.1:p.Val673Gly | |||||
| cDNA_position | 2018 | |||||
| CDS_position | 2018 | |||||
| Protein_position | 673 | |||||
| Exon_number | 10/13 | |||||
| Codon_change | gTt/gGt | |||||
| Amino_acid_change | V/G | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
