WormBase Tree Display for Variation: WBVar00115187
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| WBVar00115187 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115187 | ||||
| Other_name | cbs50708 | |||||
| HGVSg | chrIII:g.8366019A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | atccggaaggtttcctaataattctgatcttctgacccaacatattaact | ccagatatcaaagatatccacttggtgatggaaaatcgcaaaagtttgaa | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 575 294 63 37 31 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 634 366 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 910 90 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 634 366 | ||||
| CAC | HindI | 141 112 109 96 72 69 53 49 47 41 41 39 29 18 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 156 143 140 137 104 86 69 63 60 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 496 141 107 84 67 56 49 | ||||
| GAWTC | TfiI | 322 260 140 86 69 63 60 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 418 294 157 63 37 31 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 375 366 259 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 540 460 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 706 204 90 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 375 366 259 | ||||
| CAC | HindI | 141 109 96 72 69 62 53 50 49 47 41 41 39 29 18 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 223 156 143 140 104 69 63 60 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 545 141 107 84 67 56 | ||||
| GAWTC | TfiI | 408 260 140 69 63 60 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031280 | ||||
| WBGene00031281 | ||||||
| Transcript | CBG09750.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG09750.1:c.*2185+5A>G | |||||
| Intron_number | 9/17 | |||||
| CBG09750.2 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09750.2:c.*2185+5A>G | |||||
| Intron_number | 9/16 | |||||
| CBG09751.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09751.1:c.1899-5T>C | |||||
| Intron_number | 9/12 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
