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WormBase Tree Display for Variation: WBVar00115229

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Name Class

WBVar00115229EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00115229
Other_namecbs50750
Sequence_detailsSMapS_parentSequencecb25.fpc2234
Flanking_sequencesaggatccgctaaattttttgggatttagatccgacttcaatttctggtttttacatattgctttcgtggtttcagtactagagactgatcatatgcttta
Mapping_targetcb25.fpc2234
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTTAAAAhaIII, DraI617 383
GATCBfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI395 234 99 64 60 60 37 26 25
CTNAGBstDEI, DdeI574 426
RGATCYBstX2I, BstYI, MflI, PsuI, XhoII519 430 26 25
CACHindI131 111 97 82 71 71 52 43 42 32 31 27 26 22 21 20 20 18 17 14 10 10 8 7 6 5 2 2 2
TTAAMseI, Tru1I, Tru9I351 208 201 145 57 38
ATTTAAATSmiI, SwaI617 383
Polymorphic_strain_digestTTTAAAAhaIII, DraI524 383 93
GATCBfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI395 234 99 85 64 63 60
CTNAGBstDEI, DdeI1000
RGATCYBstX2I, BstYI, MflI, PsuI, XhoII544 456
CACHindI111 97 96 82 71 71 52 43 42 33 32 31 27 26 22 21 20 20 18 17 14 10 10 8 7 6 5 2 2 2 2
TTAAMseI, Tru1I, Tru9I351 201 183 172 57 36
ATTTAAATSmiI, SwaI524 383 93
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP