WormBase Tree Display for Variation: WBVar00115232

WBVar00115232 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115232
    Other_name: cbs50753
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: ttgatttaaatctgatcgtttttgcttctgttccgtttcaaattcactaa atccagttcgtttaagtaaaaaaaggatccgctaaattttttgggattta
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTTAAA AhaIII, DraI 543 457
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 385 308 99 60 60 37 26 25
        CTNAG BstDEI, DdeI 500 500
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 26 25
        CAC HindI 131 111 97 71 71 52 43 42 38 32 31 29 27 26 22 21 20 20 18 17 17 16 14 10 7 6 5 2 2 2
        TTAA MseI, Tru1I, Tru9I 277 260 208 145 57 38 15
        ATTTAAAT SmiI, SwaI 543 457
      Polymorphic_strain_digest: TTTAAA AhaIII, DraI 457 450 93
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 385 308 99 85 63 60
        CTNAG BstDEI, DdeI 1000
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 530 470
        CAC HindI 111 97 96 71 71 52 43 42 38 33 32 31 29 27 26 22 21 20 20 18 17 17 16 14 10 7 6 5 2 2 2 2
        TTAA MseI, Tru1I, Tru9I 277 260 183 172 57 36 15
        ATTTAAAT SmiI, SwaI 457 450 93
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP