WormBase Tree Display for Variation: WBVar00115240
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WBVar00115240 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00115240 | ||||
Other_name | cbs50761 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | ccggtagcaaaaattttgtcattttgagccaaaattcgagctctcaattc | attttctccatttttttttgtgtttttgaattgtttgtctgtttgatcaa | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | A | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 549 186 161 69 32 3 | ||
CAC | HindI | 354 167 74 69 66 64 55 47 29 28 19 16 6 4 2 | ||||
AATT | Sse9I, Tas, I, Tsp509I, TspEI | 123 116 96 81 78 70 68 50 49 43 41 29 29 28 28 21 16 16 13 5 | ||||
Polymorphic_strain_digest | GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 549 218 161 69 3 | |||
CAC | HindI | 234 167 120 74 69 66 64 55 47 29 28 19 16 6 4 2 | ||||
AATT | Sse9I, Tas, I, Tsp509I, TspEI | 123 116 96 81 78 70 68 50 49 47 43 41 29 28 28 21 16 16 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |