WormBase Tree Display for Variation: WBVar00115243
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| WBVar00115243 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00115243 | |||
| Other_name | cbs50764 | ||||
| HGVSg | chrIII:g.8514317T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | |
| Flanking_sequences | gaaaagagccaaatcaactcggttcgtgcaatgctccaggagaaacttcc | aatggaattcctgatgacgtcaacaccgatttgaatctctgtcgttggtt | |||
| Mapping_target | cb25.fpc2234 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (15) | ||||
| Polymorphic_strain_digest (15) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00031307 | |||
| WBGene00031308 | |||||
| Transcript | CBG09784a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG09784a.1:c.*1253T>G | ||||
| cDNA_position | 2340 | ||||
| Exon_number | 11/11 | ||||
| CBG09784a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG09784a.2:c.*1673T>G | ||||
| cDNA_position | 2760 | ||||
| Exon_number | 10/10 | ||||
| CBG09784b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG09784b.1:c.*1253T>G | ||||
| cDNA_position | 2295 | ||||
| Exon_number | 12/12 | ||||
| CBG09785a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG09785a.1:c.99A>C | ||||
| HGVSp | CBP08393.1:p.Pro33%3D | ||||
| cDNA_position | 107 | ||||
| CDS_position | 99 | ||||
| Protein_position | 33 | ||||
| Exon_number | 2/6 | ||||
| Codon_change | ccA/ccC | ||||
| Amino_acid_change | P | ||||
| CBG09785b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG09785b.1:c.99A>C | ||||
| HGVSp | CBP42700.1:p.Pro33%3D | ||||
| cDNA_position | 107 | ||||
| CDS_position | 99 | ||||
| Protein_position | 33 | ||||
| Exon_number | 2/7 | ||||
| Codon_change | ccA/ccC | ||||
| Amino_acid_change | P | ||||
| Reference | WBPaper00030778 | ||||
| Remark | Predicted by: ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
