WormBase Tree Display for Variation: WBVar00115276
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| WBVar00115276 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115276 | ||||
| Other_name | cbs50797 | |||||
| HGVSg | chrIII:g.8563398A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | agagataaaacgatgggagaatgtgtctaatttatggtgtcactgtactg | tgacgattaccgcccatgttggaaactcgagaagtggaagagttaagtat | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 436 366 138 52 8 | ||
| CTAG | BfaI, MaeI, XspI | 660 204 136 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 493 277 149 60 16 5 | ||||
| GTYRAC | HincII, HindII | 502 498 | ||||
| CAC | HindI | 138 98 91 87 86 82 71 70 54 52 45 33 31 21 16 14 3 2 2 2 2 | ||||
| GTNNAC | Hpy8I | 498 294 208 | ||||
| GTNAC | MaeIII | 493 358 149 | ||||
| GTSAC | NmuCI, Tsp45I | 493 358 149 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 366 238 114 73 65 54 52 30 8 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 436 366 108 52 30 8 | |||
| CTAG | BfaI, MaeI, XspI | 864 136 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 493 277 149 65 16 | ||||
| GTYRAC | HincII, HindII | 1000 | ||||
| CAC | HindI | 138 98 91 87 86 82 71 70 54 52 34 33 31 21 16 14 11 3 2 2 2 2 | ||||
| GTNNAC | Hpy8I | 706 294 | ||||
| GTNAC | MaeIII | 493 346 149 12 | ||||
| GTSAC | NmuCI, Tsp45I | 493 346 149 12 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 366 238 114 73 54 52 35 30 30 8 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031317 | ||||
| Transcript | CBG09797.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09797.1:c.1682A>C | |||||
| HGVSp | CBP08416.1:p.Asn561Thr | |||||
| cDNA_position | 1735 | |||||
| CDS_position | 1682 | |||||
| Protein_position | 561 | |||||
| Exon_number | 9/10 | |||||
| Codon_change | aAc/aCc | |||||
| Amino_acid_change | N/T | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
