WormBase Tree Display for Variation: WBVar00115280
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| WBVar00115280 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00115280 | ||||
| Other_name | cbs50801 | |||||
| cb50801 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.8580165G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | attcttacacttgccaatgccgtcc | ggattcattgatttgtctgcggatc | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 862 138 | ||
| CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 725 275 | ||||
| RAATTY | AcsI, ApoI, XapI | 867 133 | ||||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 501 372 127 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 450 249 153 88 60 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 502 372 126 | ||||
| CAC | HindI | 154 113 75 65 53 51 49 46 39 39 37 36 35 33 29 28 25 20 14 11 10 9 7 6 6 4 2 2 2 | ||||
| WGTACW | TatI | 818 138 44 | ||||
| Polymorphic_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 660 202 138 | |||
| CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 1000 | ||||
| RAATTY | AcsI, ApoI, XapI | 670 197 133 | ||||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 873 127 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 411 249 153 88 60 39 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 874 126 | ||||
| CAC | HindI | 154 113 75 65 53 51 49 46 39 39 37 36 35 33 30 29 25 20 14 11 10 9 7 6 6 4 2 2 | ||||
| WGTACW | TatI | 660 158 138 44 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031318 | ||||
| Transcript | CBG09798a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798a.1:c.3321G>T | |||||
| HGVSp | CBP47285.1:p.Pro1107%3D | |||||
| cDNA_position | 3321 | |||||
| CDS_position | 3321 | |||||
| Protein_position | 1107 | |||||
| Exon_number | 20/34 | |||||
| Codon_change | ccC/ccT | |||||
| Amino_acid_change | P | |||||
| CBG09798b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798b.1:c.3378G>T | |||||
| HGVSp | CBP41439.1:p.Pro1126%3D | |||||
| cDNA_position | 3378 | |||||
| CDS_position | 3378 | |||||
| Protein_position | 1126 | |||||
| Exon_number | 21/35 | |||||
| Codon_change | ccC/ccT | |||||
| Amino_acid_change | P | |||||
| CBG09798c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798c.1:c.1554G>T | |||||
| HGVSp | CBP38221.1:p.Pro518%3D | |||||
| cDNA_position | 1554 | |||||
| CDS_position | 1554 | |||||
| Protein_position | 518 | |||||
| Exon_number | 10/24 | |||||
| Codon_change | ccC/ccT | |||||
| Amino_acid_change | P | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
