WormBase Tree Display for Variation: WBVar00115284
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| WBVar00115284 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00115284 | ||||
| Other_name | cbs50805 | |||||
| cb50805 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.8586105C>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | attcgtcgatcgttcaccaaacaag | ttgcccgcccaggaagagtttgtgt | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | AGCT | AluI | 501 327 139 33 | ||
| GCNNGC | BstC8I, Cac8I | 348 327 174 147 4 | ||||
| RGCY | CviJI, CviTI | 327 155 139 138 79 67 62 33 | ||||
| AAGCTT | HindIII | 503 497 | ||||
| GTNAC | MaeIII | 338 314 132 120 96 | ||||
| Polymorphic_strain_digest | AGCT | AluI | 828 139 33 | |||
| GCNNGC | BstC8I, Cac8I | 348 331 174 147 | ||||
| RGCY | CviJI, CviTI | 482 139 138 79 67 62 33 | ||||
| AAGCTT | HindIII | 1000 | ||||
| GTNAC | MaeIII | 434 314 132 120 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031318 | ||||
| Transcript | CBG09798a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798a.1:c.7069C>A | |||||
| HGVSp | CBP47285.1:p.Val2357Ile | |||||
| cDNA_position | 7069 | |||||
| CDS_position | 7069 | |||||
| Protein_position | 2357 | |||||
| Exon_number | 29/34 | |||||
| Codon_change | Gtt/Att | |||||
| Amino_acid_change | V/I | |||||
| CBG09798b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798b.1:c.7126C>A | |||||
| HGVSp | CBP41439.1:p.Val2376Ile | |||||
| cDNA_position | 7126 | |||||
| CDS_position | 7126 | |||||
| Protein_position | 2376 | |||||
| Exon_number | 30/35 | |||||
| Codon_change | Gtt/Att | |||||
| Amino_acid_change | V/I | |||||
| CBG09798c.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798c.1:c.5302C>A | |||||
| HGVSp | CBP38221.1:p.Val1768Ile | |||||
| cDNA_position | 5302 | |||||
| CDS_position | 5302 | |||||
| Protein_position | 1768 | |||||
| Exon_number | 19/24 | |||||
| Codon_change | Gtt/Att | |||||
| Amino_acid_change | V/I | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
