WormBase Tree Display for Variation: WBVar00115287
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| WBVar00115287 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00115287 | ||||
| Other_name | cbs50808 | |||||
| cb50808 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.8586413G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | agtctccaggcagccagaagggaag | gtttgtgttagaagtgagtttgagg | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | AGCT | AluI | 585 193 191 31 | ||
| GCNNGC | BstC8I, Cac8I | 656 193 147 4 | ||||
| RGCY | CviJI, CviTI | 191 155 151 138 108 79 62 45 40 31 | ||||
| AAGCTT | HindIII | 811 189 | ||||
| GTNAC | MaeIII | 428 314 132 96 30 | ||||
| Polymorphic_strain_digest | AGCT | AluI | 776 193 31 | |||
| GCNNGC | BstC8I, Cac8I | 656 197 147 | ||||
| RGCY | CviJI, CviTI | 346 151 138 108 79 62 45 40 31 | ||||
| AAGCTT | HindIII | 1000 | ||||
| GTNAC | MaeIII | 428 314 132 126 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031318 | ||||
| Transcript | CBG09798a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798a.1:c.7377G>T | |||||
| HGVSp | CBP47285.1:p.Ser2459%3D | |||||
| cDNA_position | 7377 | |||||
| CDS_position | 7377 | |||||
| Protein_position | 2459 | |||||
| Exon_number | 29/34 | |||||
| Codon_change | agC/agT | |||||
| Amino_acid_change | S | |||||
| CBG09798b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798b.1:c.7434G>T | |||||
| HGVSp | CBP41439.1:p.Ser2478%3D | |||||
| cDNA_position | 7434 | |||||
| CDS_position | 7434 | |||||
| Protein_position | 2478 | |||||
| Exon_number | 30/35 | |||||
| Codon_change | agC/agT | |||||
| Amino_acid_change | S | |||||
| CBG09798c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG09798c.1:c.5610G>T | |||||
| HGVSp | CBP38221.1:p.Ser1870%3D | |||||
| cDNA_position | 5610 | |||||
| CDS_position | 5610 | |||||
| Protein_position | 1870 | |||||
| Exon_number | 19/24 | |||||
| Codon_change | agC/agT | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
