WormBase Tree Display for Variation: WBVar00115290
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| WBVar00115290 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115290 | ||||
| Other_name | cbs50811 | |||||
| HGVSg | chrIII:g.8588343G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | gacaggcgtttgtggattgtcgaacgattcactgaacacaattggcttct | cttgtcacgaacaacccaaagcggaacattccagctctcaacgacgcgac | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 524 476 | ||
| TCGA | EsaBC3I, TaqI, TthHB8I | 414 318 165 57 46 | ||||
| Polymorphic_strain_digest | CCGC | AciI | 1000 | |||
| TCGA | EsaBC3I, TaqI, TthHB8I | 414 375 165 46 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031318 | ||||
| Transcript | CBG09798a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798a.1:c.9211G>A | |||||
| HGVSp | CBP47285.1:p.Glu3071Lys | |||||
| cDNA_position | 9211 | |||||
| CDS_position | 9211 | |||||
| Protein_position | 3071 | |||||
| Exon_number | 31/34 | |||||
| Codon_change | Gag/Aag | |||||
| Amino_acid_change | E/K | |||||
| CBG09798b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798b.1:c.9268G>A | |||||
| HGVSp | CBP41439.1:p.Glu3090Lys | |||||
| cDNA_position | 9268 | |||||
| CDS_position | 9268 | |||||
| Protein_position | 3090 | |||||
| Exon_number | 32/35 | |||||
| Codon_change | Gag/Aag | |||||
| Amino_acid_change | E/K | |||||
| CBG09798c.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09798c.1:c.7444G>A | |||||
| HGVSp | CBP38221.1:p.Glu2482Lys | |||||
| cDNA_position | 7444 | |||||
| CDS_position | 7444 | |||||
| Protein_position | 2482 | |||||
| Exon_number | 21/24 | |||||
| Codon_change | Gag/Aag | |||||
| Amino_acid_change | E/K | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
