WormBase Tree Display for Variation: WBVar00115295

WBVar00115295 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115295
    Other_name: cbs50816
    HGVSg: chrIII:g.8589173T>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: ggacacttgcaagtgtacccgacagccttatcgatacaatgagcaactcc gaacagttattcaatccaagagcacactcatcgacatctctgacatgcat
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (27)
      Polymorphic_strain_digest (27)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031318
    Transcript: CBG09798a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG09798a.1:c.10041T>A
        HGVSp: CBP47285.1:p.Ser3347%3D
        cDNA_position: 10041
        CDS_position: 10041
        Protein_position: 3347
        Exon_number: 31/34
        Codon_change: tcT/tcA
        Amino_acid_change: S
      CBG09798b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG09798b.1:c.10098T>A
        HGVSp: CBP41439.1:p.Ser3366%3D
        cDNA_position: 10098
        CDS_position: 10098
        Protein_position: 3366
        Exon_number: 32/35
        Codon_change: tcT/tcA
        Amino_acid_change: S
      CBG09798c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG09798c.1:c.8274T>A
        HGVSp: CBP38221.1:p.Ser2758%3D
        cDNA_position: 8274
        CDS_position: 8274
        Protein_position: 2758
        Exon_number: 21/24
        Codon_change: tcT/tcA
        Amino_acid_change: S
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP