WormBase Tree Display for Variation: WBVar00115302
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WBVar00115302 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00115302 | |||
Other_name | cbs50823 | ||||
HGVSg | chrIII:g.8589236C>T | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | |
Flanking_sequences | tcacagaggagagctccacaaactcttcctggctcgtctggatttccatc | atgtatccttctggacacttgcaagtgtacccgacagccttatcgataca | |||
Mapping_target | cb25.fpc2234 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | Reference_strain_digest (27) | ||||
Polymorphic_strain_digest (27) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00031318 | |||
Transcript | CBG09798a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | CBG09798a.1:c.10104C>T | ||||
HGVSp | CBP47285.1:p.Ile3368%3D | ||||
cDNA_position | 10104 | ||||
CDS_position | 10104 | ||||
Protein_position | 3368 | ||||
Exon_number | 31/34 | ||||
Codon_change | atC/atT | ||||
Amino_acid_change | I | ||||
CBG09798b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG09798b.1:c.10161C>T | ||||
HGVSp | CBP41439.1:p.Ile3387%3D | ||||
cDNA_position | 10161 | ||||
CDS_position | 10161 | ||||
Protein_position | 3387 | ||||
Exon_number | 32/35 | ||||
Codon_change | atC/atT | ||||
Amino_acid_change | I | ||||
CBG09798c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG09798c.1:c.8337C>T | ||||
HGVSp | CBP38221.1:p.Ile2779%3D | ||||
cDNA_position | 8337 | ||||
CDS_position | 8337 | ||||
Protein_position | 2779 | ||||
Exon_number | 21/24 | ||||
Codon_change | atC/atT | ||||
Amino_acid_change | I | ||||
Reference | WBPaper00030778 | ||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |