WormBase Tree Display for Variation: WBVar00115308

WBVar00115308 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115308
    Other_name: cbs50829
    HGVSg: chrIII:g.8589327A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: gcattgtggtccagtccatccatcagtacagacacaagtgatgttgtttg ggctgtattgtgaacacaatctccatgagcattgcataaatcacagagga
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (27)
      Polymorphic_strain_digest (27)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031318
    Transcript: CBG09798a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798a.1:c.10195A>G
        HGVSp: CBP47285.1:p.Thr3399Ala
        cDNA_position: 10195
        CDS_position: 10195
        Protein_position: 3399
        Exon_number: 31/34
        Codon_change: Aca/Gca
        Amino_acid_change: T/A
      CBG09798b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798b.1:c.10252A>G
        HGVSp: CBP41439.1:p.Thr3418Ala
        cDNA_position: 10252
        CDS_position: 10252
        Protein_position: 3418
        Exon_number: 32/35
        Codon_change: Aca/Gca
        Amino_acid_change: T/A
      CBG09798c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798c.1:c.8428A>G
        HGVSp: CBP38221.1:p.Thr2810Ala
        cDNA_position: 8428
        CDS_position: 8428
        Protein_position: 2810
        Exon_number: 21/24
        Codon_change: Aca/Gca
        Amino_acid_change: T/A
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP