WormBase Tree Display for Variation: WBVar00115310

WBVar00115310 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115310
    Other_name: cbs50831
    HGVSg: chrIII:g.8589352C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: atgaagcatttgatggagcaacttggcattgtggtccagtccatccatca tacagacacaagtgatgttgtttgtggctgtattgtgaacacaatctcca
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (27)
      Polymorphic_strain_digest (27)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031318
    Transcript: CBG09798a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798a.1:c.10220C>T
        HGVSp: CBP47285.1:p.Thr3407Ile
        cDNA_position: 10220
        CDS_position: 10220
        Protein_position: 3407
        Exon_number: 31/34
        Codon_change: aCt/aTt
        Amino_acid_change: T/I
      CBG09798b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798b.1:c.10277C>T
        HGVSp: CBP41439.1:p.Thr3426Ile
        cDNA_position: 10277
        CDS_position: 10277
        Protein_position: 3426
        Exon_number: 32/35
        Codon_change: aCt/aTt
        Amino_acid_change: T/I
      CBG09798c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09798c.1:c.8453C>T
        HGVSp: CBP38221.1:p.Thr2818Ile
        cDNA_position: 8453
        CDS_position: 8453
        Protein_position: 2818
        Exon_number: 21/24
        Codon_change: aCt/aTt
        Amino_acid_change: T/I
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP