WormBase Tree Display for Variation: WBVar00115315

WBVar00115315 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115315
    Other_name: cbs50836
    HGVSg: chrIII:g.8589403T>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: agcaaagagtgaggagcaagaaaagaagagcgagaagaatgaggaggacc atgaagcatttgatggagcaacttggcattgtggtccagtccatccatca
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (27)
      Polymorphic_strain_digest (27)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031318
    Transcript: CBG09798a.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: CBG09798a.1:c.10271T>A
        HGVSp: CBP47285.1:p.Leu3424Ter
        cDNA_position: 10271
        CDS_position: 10271
        Protein_position: 3424
        Exon_number: 31/34
        Codon_change: tTg/tAg
        Amino_acid_change: L/*
      CBG09798b.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: CBG09798b.1:c.10328T>A
        HGVSp: CBP41439.1:p.Leu3443Ter
        cDNA_position: 10328
        CDS_position: 10328
        Protein_position: 3443
        Exon_number: 32/35
        Codon_change: tTg/tAg
        Amino_acid_change: L/*
      CBG09798c.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: CBG09798c.1:c.8504T>A
        HGVSp: CBP38221.1:p.Leu2835Ter
        cDNA_position: 8504
        CDS_position: 8504
        Protein_position: 2835
        Exon_number: 21/24
        Codon_change: tTg/tAg
        Amino_acid_change: L/*
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP