WormBase Tree Display for Variation: WBVar00115339

WBVar00115339 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00115339
    Other_name: cbs50860
      cb50860 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.8801048C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: taagtgaaattctacactggaaaca atcatcggcattttcaaatttacag
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 933 67
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 933 67
        CAC HindI 209 195 80 75 61 61 51 51 47 39 33 19 16 12 10 9 9 7 4 2 2 2 2 2 2
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 1000
        CAC HindI 209 195 89 75 61 61 51 51 47 39 33 19 16 12 10 9 7 4 2 2 2 2 2 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031371
    Transcript: CBG09855a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09855a.1:c.115+864C>T
        Intron_number: 1/15
      CBG09855b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09855b.1:c.1363+1377C>T
        Intron_number: 9/22
      CBG09855c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09855c.1:c.1363+1377C>T
        Intron_number: 9/23
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP