WormBase Tree Display for Variation: WBVar00115340

WBVar00115340 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00115340
    Other_name: cbs50861
      cb50861 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: gtcgggattaaactggtgtatattt aaaaaaattacagagaatgatccta
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        TTTAAA AhaIII, DraI 374 267 129 126 62 42
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 1000
        CAC HindI 282 136 123 114 90 69 49 41 36 30 14 12 4
        TTAA MseI, Tru1I, Tru9I 357 267 129 125 63 42 17
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 955 45
        TTTAAA AhaIII, DraI 373 268 129 126 62 42
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 955 45
        CAC HindI 282 136 114 94 90 69 49 41 36 30 27 14 12 4 2
        TTAA MseI, Tru1I, Tru9I 357 268 129 125 63 42 16
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031373
    Transcript: CBG09857.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        Intron_number: 6/17
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP