WormBase Tree Display for Variation: WBVar00115347

WBVar00115347 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115347
    Other_name: cbs50868
    HGVSg: chrIII:g.8829494G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: aaaacaagtgagttattttttcttttcctttggaatggataactagaaaa tatgggggttgaaaaaactgcatcgtaattgaagaagttttggacttctt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 722 278
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 722 278
        TGCA CviRI, HpyCH4V 371 277 150 108 52 42
        CAC HindI 136 123 114 103 78 63 51 49 44 42 39 33 31 30 24 18 8 7 3 2 2
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 366 356 278
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 366 356 278
        TGCA CviRI, HpyCH4V 371 277 192 108 52
        CAC HindI 136 114 94 78 63 52 51 51 49 44 42 39 33 31 30 27 24 18 8 7 3 2 2 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031373
    Transcript: CBG09857.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09857.1:c.670+44C>T
        Intron_number: 6/17
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP