WormBase Tree Display for Variation: WBVar00115348

WBVar00115348 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115348
    Other_name: cbs50869
    HGVSg: chrIII:g.8829496T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: ccaaaacaagtgagttattttttcttttcctttggaatggataactagaa actatgggggttgaaaaaactgcatcgtaattgaagaagttttggacttc
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 720 280
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 720 280
        TGCA CviRI, HpyCH4V 373 277 150 108 50 42
        CAC HindI 136 123 114 103 78 63 51 49 44 42 39 35 31 30 22 18 8 7 3 2 2
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 366 354 280
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 366 354 280
        TGCA CviRI, HpyCH4V 373 277 192 108 50
        CAC HindI 136 114 94 78 63 52 51 51 49 44 42 39 35 31 30 27 22 18 8 7 3 2 2 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031373
    Transcript: CBG09857.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09857.1:c.670+42A>G
        Intron_number: 6/17
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP