WormBase Tree Display for Variation: WBVar00115367
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| WBVar00115367 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115367 | ||||
| Other_name | cbs50888 | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | aagttgccggtgtggatttacggtaaacaatgcgcgcatccgggatttcggagtgttgtagtcggcctaccgtatcagacccatatcgcacatatcgccc | cccacgcagaatccatctaggatacgcgcgcattcggaacactcgattcagcctccccgcatcgcacacatatgagactcatcgcagctcgttgttcgcg | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 434 261 130 93 70 10 2 | ||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 432 261 124 93 86 2 2 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 630 189 170 11 | ||||
| GCGCGC | BsePI, BssHII, PauI | 469 436 95 | ||||
| GCNNGC | BstC8I, Cac8I | 434 257 214 95 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 714 170 77 39 | ||||
| CAC | HindI | 40 39 37 35 35 35 25 25 22 11 7 6 4 2 2 | ||||
| GANTC | HinfI | 513 285 70 65 36 31 | ||||
| GAWTC | TfiI | 513 451 36 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 434 261 130 95 70 10 | |||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 432 261 124 95 86 2 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 549 189 170 81 11 | ||||
| GCGCGC | BsePI, BssHII, PauI | 564 436 | ||||
| GCNNGC | BstC8I, Cac8I | 434 309 257 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 714 170 116 | ||||
| CAC | HindI | 104 94 91 87 80 77 57 44 41 40 39 37 35 35 35 25 25 22 12 7 6 3 2 2 | ||||
| GANTC | HinfI | 513 285 70 67 65 | ||||
| GAWTC | TfiI | 513 487 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
