WormBase Tree Display for Variation: WBVar00115371
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| WBVar00115371 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115371 | ||||
| Other_name | cbs50892 | |||||
| HGVSg | chrIII:g.8927976T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | ctgggtgtggagacgtctgccagataactaccgtccacaatatatcaatg | attggtttgtgataattctgatggagaatgcttgagtggttagtatattt | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GACGTC | AatII, ZraI | 538 462 | ||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 535 465 | ||||
| TTTAAA | AhaIII, DraI | 927 73 | ||||
| CTAG | BfaI, MaeI, XspI | 444 229 44 43 43 43 25 22 22 22 21 21 21 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 581 165 154 57 43 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 362 196 154 107 73 65 43 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 465 326 209 | ||||
| TTAA | MseI, Tru1I, Tru9I | 280 255 198 97 68 42 32 16 8 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 504 147 124 59 45 44 43 14 12 8 | ||||
| Polymorphic_strain_digest | GACGTC | AatII, ZraI | 1000 | |||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 1000 | ||||
| TTTAAA | AhaIII, DraI | 1000 | ||||
| CTAG | BfaI, MaeI, XspI | 444 229 108 43 25 22 22 22 22 21 21 21 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 581 362 57 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 405 196 154 107 73 65 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 674 326 | ||||
| TTAA | MseI, Tru1I, Tru9I | 323 255 154 97 68 43 32 16 8 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 518 147 124 59 45 44 43 12 8 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031395 | ||||
| Transcript | CBG09882.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09882.1:c.674A>G | |||||
| HGVSp | CBP16746.1:p.Glu225Gly | |||||
| cDNA_position | 769 | |||||
| CDS_position | 674 | |||||
| Protein_position | 225 | |||||
| Exon_number | 7/10 | |||||
| Codon_change | gAa/gGa | |||||
| Amino_acid_change | E/G | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
