WormBase Tree Display for Variation: WBVar00115373
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| WBVar00115373 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115373 | ||||
| Other_name | cbs50894 | |||||
| HGVSg | chrIII:g.8928206A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | attttttgaagtcatgacctagattttttagatcatgacctcgatttttt | aagtcatgacctagattttttaggtcatgacctagattttttgaagtcat | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GACGTC | AatII, ZraI | 692 308 | ||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 695 305 | ||||
| TTTAAA | AhaIII, DraI | 697 193 110 | ||||
| CTAG | BfaI, MaeI, XspI | 229 214 61 61 43 43 43 43 25 25 22 22 22 22 21 21 21 21 21 20 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 351 193 165 154 79 43 15 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 362 193 154 107 102 43 39 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 695 209 96 | ||||
| TTAA | MseI, Tru1I, Tru9I | 280 198 151 97 93 69 42 42 16 8 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 734 124 63 45 14 12 8 | ||||
| Polymorphic_strain_digest | GACGTC | AatII, ZraI | 1000 | |||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 1000 | ||||
| TTTAAA | AhaIII, DraI | 890 110 | ||||
| CTAG | BfaI, MaeI, XspI | 229 214 125 61 43 43 25 25 22 22 22 22 22 21 21 21 21 21 20 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 362 351 193 79 15 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 405 193 154 107 102 39 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 904 96 | ||||
| TTAA | MseI, Tru1I, Tru9I | 323 154 151 97 93 69 43 42 16 8 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 748 124 63 45 12 8 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031395 | ||||
| Transcript | CBG09882.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09882.1:c.545-101T>G | |||||
| Intron_number | 6/9 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
