WormBase Tree Display for Variation: WBVar00115390

WBVar00115390 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115390
    Other_name: cbs50911
    HGVSg: chrIII:g.9010706A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: cacgacctcggaattcacaccgaaggattcgactgtccataaatcattct tgataattggaaactgaataaattcattgttaacaaaaattgtgtttttt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 1000
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 521 479
        GCTNAGC BlpI, Bpu1102I, Bsp1720I, CelII, EspI 612 388
        CTNAG BstDEI, DdeI 529 280 108 83
        CAC HindI 121 121 108 87 77 76 59 52 51 48 44 27 24 22 22 18 15 11 4 4 4 3 2
        TCNNGA Hpy178III, Hpy188III 428 246 110 44 42 38 35 30 27
        CMGCKG MspA1I, NspBII 384 296 196 116 8
      Polymorphic_strain_digest: CCGC AciI 609 391
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 494 479 27
        GCTNAGC BlpI, Bpu1102I, Bsp1720I, CelII, EspI 1000
        CTNAG BstDEI, DdeI 637 280 83
        CAC HindI 121 121 108 87 77 59 52 51 48 44 42 34 27 24 22 22 18 15 11 4 4 4 3 2
        TCNNGA Hpy178III, Hpy188III 246 223 205 110 44 42 38 35 30 27
        CMGCKG MspA1I, NspBII 384 304 196 116
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031414
    Transcript: CBG09906.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09906.1:c.*9T>G
        cDNA_position: 530
        Exon_number: 5/5
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP