WormBase Tree Display for Variation: WBVar00115392
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WBVar00115392 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00115392 | ||||
Other_name | cbs50913 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | gggcctgaggaaattttcaaggcccgggcccggcacggaaggcccggtgtcaaaaattctgtatttttgagccaaattttgagctctcaatataattttt | ccattttttttcgtatttcggattgtttgtctgtctgatcaaaaaagatcgaaaaactcgaaaaaattttttttggtcgaaaaaaatcacataagggccc | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | T | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 283 179 117 97 91 53 53 43 42 22 20 | ||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 426 358 115 55 46 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 426 358 115 55 46 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 230 173 168 156 148 46 26 19 14 9 6 5 | ||||
RGCY | CviJI, CviTI | 194 162 115 105 78 55 54 46 36 29 21 19 16 14 12 11 9 8 6 5 5 | ||||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 396 174 156 148 46 27 20 14 8 6 5 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 283 179 117 72 65 53 53 43 42 22 20 20 19 12 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 283 179 117 111 97 53 53 43 42 22 | |||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 426 358 115 46 43 12 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 426 358 115 46 43 12 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 230 173 170 168 148 46 26 19 9 6 5 | ||||
RGCY | CviJI, CviTI | 194 162 115 105 78 55 54 46 43 36 21 19 16 12 11 9 8 6 5 5 | ||||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 396 174 170 148 46 27 20 8 6 5 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 283 179 117 72 65 53 53 43 42 39 22 20 12 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |