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WormBase Tree Display for Variation: WBVar00115392

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Name Class

WBVar00115392EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00115392
Other_namecbs50913
Sequence_detailsSMapS_parentSequencecb25.fpc2234
Flanking_sequencesgggcctgaggaaattttcaaggcccgggcccggcacggaaggcccggtgtcaaaaattctgtatttttgagccaaattttgagctctcaatataatttttccattttttttcgtatttcggattgtttgtctgtctgatcaaaaaagatcgaaaaactcgaaaaaattttttttggtcgaaaaaaatcacataagggccc
Mapping_targetcb25.fpc2234
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI283 179 117 97 91 53 53 43 42 22 20
GRGCYCBanII, Eco24I, EcoT38I, FriOI, HgiJII426 358 115 55 46
GDGCHCBmyI, Bsp1286I, MhlI, SduI426 358 115 55 46
GGCCBshFI, BshI, BsuRI, HaeIII, PalI230 173 168 156 148 46 26 19 14 9 6 5
RGCYCviJI, CviTI194 162 115 105 78 55 54 46 36 29 21 19 16 14 12 11 9 8 6 5 5
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI396 174 156 148 46 27 20 14 8 6 5
AATTSse9I, TasI, Tsp509I, TspEI283 179 117 72 65 53 53 43 42 22 20 20 19 12
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI283 179 117 111 97 53 53 43 42 22
GRGCYCBanII, Eco24I, EcoT38I, FriOI, HgiJII426 358 115 46 43 12
GDGCHCBmyI, Bsp1286I, MhlI, SduI426 358 115 46 43 12
GGCCBshFI, BshI, BsuRI, HaeIII, PalI230 173 170 168 148 46 26 19 9 6 5
RGCYCviJI, CviTI194 162 115 105 78 55 54 46 43 36 21 19 16 12 11 9 8 6 5 5
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI396 174 170 148 46 27 20 8 6 5
AATTSse9I, TasI, Tsp509I, TspEI283 179 117 72 65 53 53 43 42 39 22 20 12
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP