WormBase Tree Display for Variation: WBVar00115432

WBVar00115432 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115432
    Other_name: cbs50953
    HGVSg: chrIII:g.9174562A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: aggtaaatgggctcaaagttaaaagttaaaagggttcttctattacaggt tcacggtagttgttcaaattgtcactcctcagttcttaccctaactgctt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CAC HindI 119 104 83 80 74 71 71 55 52 42 39 38 33 30 21 18 14 13 12 11 9 5 2 2 2
        GTNAC MaeIII 474 364 162
        GTSAC NmuCI, Tsp45I 526 474
        AATT Sse9I, TasI, Tsp509I, TspEI 398 297 133 81 41 34 16
      Polymorphic_strain_digest: CAC HindI 119 104 83 77 74 71 71 55 52 42 39 38 33 30 21 18 14 13 12 11 9 5 3 2 2 2
        GTNAC MaeIII 474 343 162 21
        GTSAC NmuCI, Tsp45I 505 474 21
        AATT Sse9I, TasI, Tsp509I, TspEI 398 253 133 81 44 41 34 16
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031449
    Transcript: CBG09954.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09954.1:c.534+40A>C
        Intron_number: 6/9
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP