WormBase Tree Display for Variation: WBVar00115476

WBVar00115476 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115476
    Other_name: cbs50997
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: aattttttctctgtttttctcgaaagcctatcccattatgacctttgttg aaggatacggtagccaaagtactggtgatctctgaattttttttgatttt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 345 251 136 97 85 26 19 15 14 12
        GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 581 419
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 581 419
        CCANNNNNNTGG BstXI 518 482
        CAC HindI 179 163 129 87 85 75 61 36 34 29 21 21 20 16 16 11 11 6
        TTAA MseI, Tru1I, Tru9I 449 391 104 44 12
        AATT Sse9I, TasI, Tsp509I, TspEI 251 212 94 91 85 51 46 45 27 26 19 15 14 12 12
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 345 251 136 104 97 26 15 14 12
        GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 508 419 73
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 508 419 73
        CCANNNNNNTGG BstXI 1000
        CAC HindI 264 163 129 87 75 61 36 34 29 21 21 20 16 16 11 11 6
        TTAA MseI, Tru1I, Tru9I 449 228 163 104 44 12
        AATT Sse9I, TasI, Tsp509I, TspEI 251 212 104 94 91 51 46 45 27 26 15 14 12 12
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP