WormBase Tree Display for Variation: WBVar00115517
expand all nodes | collapse all nodes | view schema
WBVar00115517 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00115517 | ||||
Other_name | cbs51038 | |||||
cb51038 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | taaagaacttctaacttgtcccata | atcttattaccgatcttgttacata | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RGCY | CviJI, CviTI | 322 207 204 91 65 40 26 23 14 8 | ||
TCNGA | Hpy188I | 334 174 135 122 89 88 36 22 | ||||
GTNAC | MaeIII | 443 334 75 74 56 18 | ||||
Polymorphic_strain_digest | RGCY | CviJI, CviTI | 322 207 204 91 65 49 40 14 8 | |||
TCNGA | Hpy188I | 334 262 122 96 89 39 36 22 | ||||
GTNAC | MaeIII | 339 334 104 75 74 56 18 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |