WormBase Tree Display for Variation: WBVar00115521
expand all nodes | collapse all nodes | view schema
| WBVar00115521 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115521 | ||||
| Other_name | cbs51042 | |||||
| HGVSg | chrIII:g.9511617G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | gcatttcccgcttttctctgtctctctgcgtctcttttcagtgtttactt | tgccttgaaaactgacaacaatttgaataggaaaatagaaaagaagccta | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 232 204 200 92 89 73 66 24 20 | ||
| TTTAAA | AhaIII, DraI | 840 160 | ||||
| CTNAG | BstDEI, DdeI | 387 335 141 137 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 602 205 117 35 29 12 | ||||
| CAC | HindI | 439 180 140 106 52 43 27 13 | ||||
| TCNNGA | Hpy178III, Hpy188III | 615 121 118 104 22 20 | ||||
| CGWCG | Hpy99I | 1000 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 186 161 92 91 89 73 58 41 39 38 34 32 24 20 9 8 5 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 270 232 200 92 89 73 24 20 | |||
| TTTAAA | AhaIII, DraI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 722 141 137 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 602 205 100 35 29 17 12 | ||||
| CAC | HindI | 384 180 140 107 106 43 27 13 | ||||
| TCNNGA | Hpy178III, Hpy188III | 736 124 118 22 | ||||
| CGWCG | Hpy99I | 789 211 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 784 216 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 186 161 92 91 89 73 58 41 39 37 34 32 24 20 9 9 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031540 | ||||
| Transcript | CBG10059.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG10059.1:c.*185G>T | |||||
| cDNA_position | 1453 | |||||
| Exon_number | 11/11 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
