WormBase Tree Display for Variation: WBVar00115528
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| WBVar00115528 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115528 | ||||
| Other_name | cbs51049 | |||||
| HGVSg | chrIII:g.9511867G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | ttaagaactttcgacctatcgttatataatttatatttccatccgctcgt | tgttgactttcctgactgctctcgtttgactttgatgtttctgccgagag | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 323 232 204 131 66 24 20 | ||
| TTTAAA | AhaIII, DraI | 590 410 | ||||
| CTNAG | BstDEI, DdeI | 637 335 28 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 602 279 117 2 | ||||
| CAC | HindI | 458 140 107 106 52 50 43 31 13 | ||||
| TCNNGA | Hpy178III, Hpy188III | 365 121 118 104 85 84 74 22 16 11 | ||||
| CGWCG | Hpy99I | 1000 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 167 161 150 122 91 58 41 39 38 34 32 24 20 9 8 6 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 323 270 232 131 24 20 | |||
| TTTAAA | AhaIII, DraI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 972 28 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 602 279 100 17 2 | ||||
| CAC | HindI | 403 140 107 107 106 50 43 31 13 | ||||
| TCNNGA | Hpy178III, Hpy188III | 486 178 118 85 84 22 16 11 | ||||
| CGWCG | Hpy99I | 539 461 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 534 466 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 167 161 150 122 91 58 41 39 37 34 32 24 20 9 9 6 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031541 | ||||
| Transcript | CBG10060a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG10060a.1:c.63G>T | |||||
| HGVSp | CBP42725.1:p.Gln21His | |||||
| cDNA_position | 63 | |||||
| CDS_position | 63 | |||||
| Protein_position | 21 | |||||
| Exon_number | 1/6 | |||||
| Codon_change | caG/caT | |||||
| Amino_acid_change | Q/H | |||||
| CBG10060b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG10060b.1:c.63G>T | |||||
| HGVSp | CBP40664.1:p.Gln21His | |||||
| cDNA_position | 63 | |||||
| CDS_position | 63 | |||||
| Protein_position | 21 | |||||
| Exon_number | 1/7 | |||||
| Codon_change | caG/caT | |||||
| Amino_acid_change | Q/H | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
