WormBase Tree Display for Variation: WBVar00115529

WBVar00115529 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115529
    Other_name: cbs51050
    HGVSg: chrIII:g.9511902G>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: agggaaatgttgaaatcagagaaaagacaattactttaagaactttcgac tatcgttatataatttatatttccatccgctcgtctgttgactttcctga
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 358 232 204 96 66 24 20
        TTTAAA AhaIII, DraI 555 445
        CTNAG BstDEI, DdeI 672 328
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 569 314 117
        CAC HindI 458 140 107 84 66 52 50 43
        TCNNGA Hpy178III, Hpy188III 330 121 118 104 85 84 74 51 22 11
        CGWCG Hpy99I 1000
        ACGT HpyCH4IV, MaeII, TaiI, TscI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 167 161 150 91 87 58 41 41 39 38 34 32 24 20 9 8
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 358 270 232 96 24 20
        TTTAAA AhaIII, DraI 1000
        CTNAG BstDEI, DdeI 1000
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 569 314 100 17
        CAC HindI 403 140 107 107 84 66 50 43
        TCNNGA Hpy178III, Hpy188III 451 178 118 85 84 51 22 11
        CGWCG Hpy99I 504 496
        ACGT HpyCH4IV, MaeII, TaiI, TscI 501 499
        AATT Sse9I, TasI, Tsp509I, TspEI 167 161 150 91 87 58 41 41 39 37 34 32 24 20 9 9
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031541
    Transcript: CBG10060a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG10060a.1:c.98G>C
        HGVSp: CBP42725.1:p.Arg33Thr
        cDNA_position: 98
        CDS_position: 98
        Protein_position: 33
        Exon_number: 1/6
        Codon_change: aGg/aCg
        Amino_acid_change: R/T
      CBG10060b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG10060b.1:c.98G>C
        HGVSp: CBP40664.1:p.Arg33Thr
        cDNA_position: 98
        CDS_position: 98
        Protein_position: 33
        Exon_number: 1/7
        Codon_change: aGg/aCg
        Amino_acid_change: R/T
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP