WormBase Tree Display for Variation: WBVar00115543

WBVar00115543 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115543
    Other_name: cbs51064
    HGVSg: chrIII:g.9530718G>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: ttgaatggagagaatgcaatatccttcacggcgataagctccttctgttg ggaacgacgagatgggcaagagagcgttctttgcatcctgggagaacata
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 498 276 146 80
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 442 313 201 22 22
      Polymorphic_strain_digest: CCGC AciI 774 146 80
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 442 313 149 52 22 22
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031546
    Transcript: CBG10067.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG10067.1:c.606G>C
        HGVSp: CBP02460.1:p.Pro202%3D
        cDNA_position: 606
        CDS_position: 606
        Protein_position: 202
        Exon_number: 3/8
        Codon_change: ccG/ccC
        Amino_acid_change: P
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP