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WormBase Tree Display for Variation: WBVar00115573

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Name Class

WBVar00115573EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00115573
Other_namecbs51094
Sequence_detailsSMapS_parentSequencecb25.fpc2234
Flanking_sequencestgattgatggatggaaaatggggtatgggagttcgatggagacattgaaaaagaagatgccgatgagttaatgaactttattagataattgatgatctga
Mapping_targetcb25.fpc2234
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTTAAAAhaIII, DraI452 374 126 48
ACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI238 236 218 180 128
CTNAGBstDEI, DdeI595 339 66
TGCACviRI, HpyCH4V302 215 162 161 117 24 19
TCGAEsaBC3I, TaqI, TthHB8I447 330 186 37
CACHindI173 127 102 97 77 57 55 53 39 38 34 28 25 23 20 11 11 7 7 6 4 4 2
TCNGAHpy188I307 163 158 144 97 78 53
TTAAMseI, Tru1I, Tru9I348 146 134 130 95 47 42 31 27
Polymorphic_strain_digestTTTAAAAhaIII, DraI452 374 174
ACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI238 190 180 134 128 84 46
CTNAGBstDEI, DdeI339 224 199 172 66
TGCACviRI, HpyCH4V278 215 186 161 117 24 19
TCGAEsaBC3I, TaqI, TthHB8I447 256 186 74 37
CACHindI147 125 102 97 77 57 55 53 39 38 34 28 26 25 23 20 11 11 7 7 6 4 4 2 2
TCNGAHpy188I307 163 144 97 94 78 64 53
TTAAMseI, Tru1I, Tru9I348 146 134 130 95 78 42 27
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP