WormBase Tree Display for Variation: WBVar00115573
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WBVar00115573 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00115573 | ||||
Other_name | cbs51094 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | tgattgatggatggaaaatggggtatgggagttcgatggagacattgaaa | aagaagatgccgatgagttaatgaactttattagataattgatgatctga | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 452 374 126 48 | ||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 238 236 218 180 128 | ||||
CTNAG | BstDEI, DdeI | 595 339 66 | ||||
TGCA | CviRI, HpyCH4V | 302 215 162 161 117 24 19 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 447 330 186 37 | ||||
CAC | HindI | 173 127 102 97 77 57 55 53 39 38 34 28 25 23 20 11 11 7 7 6 4 4 2 | ||||
TCNGA | Hpy188I | 307 163 158 144 97 78 53 | ||||
TTAA | MseI, Tru1I, Tru9I | 348 146 134 130 95 47 42 31 27 | ||||
Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 452 374 174 | |||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 238 190 180 134 128 84 46 | ||||
CTNAG | BstDEI, DdeI | 339 224 199 172 66 | ||||
TGCA | CviRI, HpyCH4V | 278 215 186 161 117 24 19 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 447 256 186 74 37 | ||||
CAC | HindI | 147 125 102 97 77 57 55 53 39 38 34 28 26 25 23 20 11 11 7 7 6 4 4 2 2 | ||||
TCNGA | Hpy188I | 307 163 144 97 94 78 64 53 | ||||
TTAA | MseI, Tru1I, Tru9I | 348 146 134 130 95 78 42 27 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |