Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00115578

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00115578EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00115578
Other_namecbs51099
HGVSgchrIII:g.9857264G>A
Sequence_detailsSMapS_parentSequencecb25.fpc2234
Flanking_sequencesctcatcagatccgtatcatcgtccattggtaatggcggctggaacattttatttttttgaagatttgaatttttaaactcactccttttcgaacagtgaa
Mapping_targetcb25.fpc2234
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCTTAAGAflII, BfrI, BspTI, Bst98I, MspCI, Vha464I1000
GAANNNNTTCAsp700I, MroXI, PdmI, XmnI504 496
GGNNCCBscBI, BspLI, NlaIV, PspN4I404 249 241 90 16
CACHindI306 82 79 72 72 67 55 50 41 38 26 24 21 20 17 12 6 4 2 2 2 2
CTYRAGSmlI1000
AATTSse9I, TasI, Tsp509I, TspEI271 224 146 94 66 47 45 41 38 17 11
Polymorphic_strain_digestCTTAAGAflII, BfrI, BspTI, Bst98I, MspCI, Vha464I631 369
GAANNNNTTCAsp700I, MroXI, PdmI, XmnI1000
GGNNCCBscBI, BspLI, NlaIV, PspN4I404 241 146 103 90 16
CACHindI306 105 82 79 72 72 55 50 41 26 24 21 20 17 12 6 4 2 2 2 2
CTYRAGSmlI631 369
AATTSse9I, TasI, Tsp509I, TspEI224 208 146 94 66 63 47 45 41 38 17 11
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00031608
TranscriptCBG10142a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG10142a.1:c.385-13G>A
Intron_number5/20
CBG10142b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG10142b.1:c.589-13G>A
Intron_number6/21
CBG10142c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG10142c.1:c.100-13G>A
Intron_number3/18
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP