WormBase Tree Display for Variation: WBVar00115578
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WBVar00115578 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00115578 | ||||
Other_name | cbs51099 | |||||
HGVSg | chrIII:g.9857264G>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | ctcatcagatccgtatcatcgtccattggtaatggcggctggaacatttt | atttttttgaagatttgaatttttaaactcactccttttcgaacagtgaa | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CTTAAG | AflII, BfrI, BspTI, Bst98I, MspCI, Vha464I | 1000 | ||
GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 504 496 | ||||
GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 404 249 241 90 16 | ||||
CAC | HindI | 306 82 79 72 72 67 55 50 41 38 26 24 21 20 17 12 6 4 2 2 2 2 | ||||
CTYRAG | SmlI | 1000 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 271 224 146 94 66 47 45 41 38 17 11 | ||||
Polymorphic_strain_digest | CTTAAG | AflII, BfrI, BspTI, Bst98I, MspCI, Vha464I | 631 369 | |||
GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 404 241 146 103 90 16 | ||||
CAC | HindI | 306 105 82 79 72 72 55 50 41 26 24 21 20 17 12 6 4 2 2 2 2 | ||||
CTYRAG | SmlI | 631 369 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 224 208 146 94 66 63 47 45 41 38 17 11 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00031608 | ||||
Transcript | CBG10142a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG10142a.1:c.385-13G>A | |||||
Intron_number | 5/20 | |||||
CBG10142b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG10142b.1:c.589-13G>A | |||||
Intron_number | 6/21 | |||||
CBG10142c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG10142c.1:c.100-13G>A | |||||
Intron_number | 3/18 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |