WormBase Tree Display for Variation: WBVar00115580
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| WBVar00115580 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115580 | ||||
| Other_name | cbs51101 | |||||
| HGVSg | chrIII:g.9857284T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | ctgattgaaccatcggaacactcatcagatccgtatcatcgtccattggt | atggcggctggaacattttcatttttttgaagatttgaatttttaaactc | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CTTAAG | AflII, BfrI, BspTI, Bst98I, MspCI, Vha464I | 1000 | ||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 516 484 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 384 261 249 90 16 | ||||
| CAC | HindI | 306 98 82 72 72 55 51 50 41 38 26 24 21 20 17 12 6 2 2 2 2 1 | ||||
| CTYRAG | SmlI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 271 224 146 94 66 65 41 38 38 17 | ||||
| Polymorphic_strain_digest | CTTAAG | AflII, BfrI, BspTI, Bst98I, MspCI, Vha464I | 611 389 | |||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 384 261 146 103 90 16 | ||||
| CAC | HindI | 306 98 89 82 72 72 55 50 41 26 24 21 20 17 12 6 2 2 2 2 1 | ||||
| CTYRAG | SmlI | 611 389 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 224 208 146 94 66 65 63 41 38 38 17 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031608 | ||||
| Transcript | CBG10142a.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | |||||
| HGVSc | CBG10142a.1:c.392T>A | |||||
| HGVSp | CBP43711.1:p.Leu131Ter | |||||
| cDNA_position | 420 | |||||
| CDS_position | 392 | |||||
| Protein_position | 131 | |||||
| Exon_number | 6/21 | |||||
| Codon_change | tTa/tAa | |||||
| Amino_acid_change | L/* | |||||
| CBG10142b.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | |||||
| HGVSc | CBG10142b.1:c.596T>A | |||||
| HGVSp | CBP47283.1:p.Leu199Ter | |||||
| cDNA_position | 624 | |||||
| CDS_position | 596 | |||||
| Protein_position | 199 | |||||
| Exon_number | 7/22 | |||||
| Codon_change | tTa/tAa | |||||
| Amino_acid_change | L/* | |||||
| CBG10142c.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | |||||
| HGVSc | CBG10142c.1:c.107T>A | |||||
| HGVSp | CBP39822.1:p.Leu36Ter | |||||
| cDNA_position | 135 | |||||
| CDS_position | 107 | |||||
| Protein_position | 36 | |||||
| Exon_number | 4/19 | |||||
| Codon_change | tTa/tAa | |||||
| Amino_acid_change | L/* | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
