WormBase Tree Display for Variation: WBVar00115589

WBVar00115589 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115589
    Other_name: cbs51110
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: cgttctttttttcgatagaggagaaaagtagattgatagcttgatgatat gaaggtcagttcttttctgatgttcgttctttttctgtcctattgttcag
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GACNNNGTC AspI, PflFI, PsyI, TelI, Tth111I 684 316
        CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 1000
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 756 244
        CCGG BsiSI, HapII, HpaII, MspI 1000
        G BstDEI, DdeI 648 261 79 12
        GATATC Eco32I, EcoRV 498 497 5
        TCGA EsaBC3I, TaqI, TthHB8I 478 278 66 45 41 38 33 21
        CGWCG Hpy99I 678 322
        TCCNGGA PfoI 1000
      Polymorphic_strain_digest: GACNNNGTC AspI, PflFI, PsyI, TelI, Tth111I 1000
        CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 568 432
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 432 324 244
        CCGG BsiSI, HapII, HpaII, MspI 569 431
        G BstDEI, DdeI 648 261 51 28 12
        GATATC Eco32I, EcoRV 995 5
        TCGA EsaBC3I, TaqI, TthHB8I 516 278 66 45 41 33 21
        CGWCG Hpy99I 1000
        TCCNGGA PfoI 570 430
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP