Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00115591

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00115591EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00115591
Other_namecbs51112
HGVSgchrIII:g.9896406G>A
Sequence_detailsSMapS_parentSequencecb25.fpc2234
Flanking_sequencestcgtgtacagttcgtgggaaaccgcagaatttttgcgtttttttcaatgattttcagcgatgttttttgaaattttctcttttttcgttgaacttttttc
Mapping_targetcb25.fpc2234
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI437 187 183 111 44 38
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI1000
RGCYCviJI, CviTI428 203 196 167 6
CACHindI149 131 107 102 83 71 65 48 42 34 27 27 25 24 20 12 11 11 11
TCNNGAHpy178III, Hpy188III322 260 236 182
AATTSse9I, TasI, Tsp509I, TspEI250 187 128 79 73 63 59 44 38 38 20 11 10
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI437 338 187 38
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI583 417
RGCYCviJI, CviTI428 196 167 138 65 6
CACHindI149 107 102 98 83 71 65 48 42 34 33 27 27 25 24 20 12 11 11 11
TCNNGAHpy178III, Hpy188III558 260 182
AATTSse9I, TasI, Tsp509I, TspEI250 187 128 79 74 73 59 44 39 38 19 10
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00031613
TranscriptCBG10150.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG10150.1:c.812+230G>A
Intron_number6/7
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP