WormBase Tree Display for Variation: WBVar00115591
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WBVar00115591 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00115591 | ||||
Other_name | cbs51112 | |||||
HGVSg | chrIII:g.9896406G>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
Flanking_sequences | tcgtgtacagttcgtgggaaaccgcagaatttttgcgtttttttcaatga | ttttcagcgatgttttttgaaattttctcttttttcgttgaacttttttc | ||||
Mapping_target | cb25.fpc2234 | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 437 187 183 111 44 38 | ||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | ||||
RGCY | CviJI, CviTI | 428 203 196 167 6 | ||||
CAC | HindI | 149 131 107 102 83 71 65 48 42 34 27 27 25 24 20 12 11 11 11 | ||||
TCNNGA | Hpy178III, Hpy188III | 322 260 236 182 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 250 187 128 79 73 63 59 44 38 38 20 11 10 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 437 338 187 38 | |||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 583 417 | ||||
RGCY | CviJI, CviTI | 428 196 167 138 65 6 | ||||
CAC | HindI | 149 107 102 98 83 71 65 48 42 34 33 27 27 25 24 20 12 11 11 11 | ||||
TCNNGA | Hpy178III, Hpy188III | 558 260 182 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 250 187 128 79 74 73 59 44 39 38 19 10 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00031613 | ||||
Transcript | CBG10150.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG10150.1:c.812+230G>A | |||||
Intron_number | 6/7 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |