WormBase Tree Display for Variation: WBVar00116265
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| WBVar00116265 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00116265 | ||||
| Other_name | cbs51786 | |||||
| HGVSg | chrX:g.12140711A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
| Flanking_sequences | gagaacataggagggttcttgtcaagtttccatttcaagttcggcatgta | ccaattcggaagccttgtttttctctgcttctttggttctgcgaagtccg | ||||
| Mapping_target | cb25.fpc2397 | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 793 207 | ||
| ACTAGT | AhlI, BcuI, SpeI | 1000 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 406 270 233 55 36 | ||||
| CTAG | BfaI, MaeI, XspI | 1000 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 441 325 234 | ||||
| RGCY | CviJI, CviTI | 238 185 141 103 99 73 49 47 40 25 | ||||
| GTNAC | MaeIII | 504 374 122 | ||||
| Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 502 291 207 | |||
| ACTAGT | AhlI, BcuI, SpeI | 677 323 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 406 306 233 55 | ||||
| CTAG | BfaI, MaeI, XspI | 678 322 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 766 234 | ||||
| RGCY | CviJI, CviTI | 238 185 141 103 99 73 72 49 40 | ||||
| GTNAC | MaeIII | 878 122 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00089182 | ||||
| Transcript | CBG27768.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG27768.1:c.525T>G | |||||
| HGVSp | CBP41397.1:p.Gly175%3D | |||||
| cDNA_position | 525 | |||||
| CDS_position | 525 | |||||
| Protein_position | 175 | |||||
| Exon_number | 3/3 | |||||
| Codon_change | ggT/ggG | |||||
| Amino_acid_change | G | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
