WormBase Tree Display for Variation: WBVar00116276

WBVar00116276 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00116276
    Other_name: cbs51797
      cb51797 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2397
    Flanking_sequences: tcctttgtcacattttaaagtgggt tcaccagtggagaaatgacaaggac
    Mapping_target: cb25.fpc2397
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 353 300 290 57
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 827 117 56
        RGCY CviJI, CviTI 300 172 108 75 72 59 59 57 43 38 17
        TCGA EsaBC3I, TaqI, TthHB8I 398 235 193 106 57 11
        CGWCG Hpy99I 592 263 81 59 5
        AATT Sse9I, TasI, Tsp509I, TspEI 118 115 108 107 80 80 77 76 68 37 33 24 21 18 17 9 7 5
      Polymorphic_strain_digest: AGCT AluI 353 300 276 57 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 944 56
        RGCY CviJI, CviTI 300 172 108 75 72 59 59 57 38 29 17 14
        TCGA EsaBC3I, TaqI, TthHB8I 409 235 193 106 57
        CGWCG Hpy99I 358 263 234 81 59 5
        AATT Sse9I, TasI, Tsp509I, TspEI 118 115 108 107 80 80 77 68 57 37 33 24 21 19 18 17 9 7 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP