WormBase Tree Display for Variation: WBVar00116279
expand all nodes | collapse all nodes | view schema
WBVar00116279 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00116279 | ||||
Other_name | cbs51800 | |||||
cb51800 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
Flanking_sequences | tctgacttctctatttgtaaaaatc | ctcaattgaaaacaaattgtgtcaa | ||||
Mapping_target | cb25.fpc2397 | |||||
Type_of_mutation | Substitution | T | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CAC | HindI | 136 87 85 70 67 60 56 53 52 52 46 36 35 33 31 27 21 13 10 9 8 4 3 2 2 2 | ||
CGWCG | Hpy99I | 592 252 138 18 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 587 368 45 | ||||
Polymorphic_strain_digest | CAC | HindI | 171 87 85 70 67 60 56 53 52 52 46 36 33 31 27 21 13 10 9 8 4 3 2 2 2 | |||
CGWCG | Hpy99I | 584 252 138 18 8 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 955 45 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |