WormBase Tree Display for Variation: WBVar00116299
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WBVar00116299 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00116299 | ||||
Other_name | cbs51820 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
Flanking_sequences | agttttgaaagttccgctacaaattgaaatttccgttgtgtgatgctgaa | catcatagttttaaaacagcttgcgagcctcaaaaattatcattgacaaa | ||||
Mapping_target | cb25.fpc2397 | |||||
Type_of_mutation | Substitution | A | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 656 215 129 | ||
GATNNNNATC | BsaBI, Bse8I, BseJI, BsiBI, BsrBRI, MamI | 1000 | ||||
CAC | HindI | 146 132 85 79 68 59 49 44 42 38 37 33 33 27 26 24 24 21 20 3 2 2 2 2 2 | ||||
Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 785 215 | |||
GATNNNNATC | BsaBI, Bse8I, BseJI, BsiBI, BsrBRI, MamI | 873 127 | ||||
CAC | HindI | 146 132 85 79 68 59 49 44 42 38 37 33 33 28 27 24 24 21 20 3 2 2 2 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |