WormBase Tree Display for Variation: WBVar00116340

WBVar00116340 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00116340
    Other_name: cbs51861
    HGVSg: chrX:g.12549610A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2397
    Flanking_sequences: gaagaagattttcgaaaattaagcaacgtaccattccatatgggtaatag cctctgcattgaaaagcaagaacgagtatatggcaattatgaaatacaat
    Mapping_target: cb25.fpc2397
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RGCY CviJI, CviTI 474 208 108 84 55 36 27 8
        TCGA EsaBC3I, TaqI, TthHB8I 512 255 113 88 26 6
        GANTC HinfI 758 242
        GAWTC TfiI 758 242
      Polymorphic_strain_digest: RGCY CviJI, CviTI 382 208 108 92 84 55 36 27 8
        TCGA EsaBC3I, TaqI, TthHB8I 370 255 142 113 88 26 6
        GANTC HinfI 758 167 75
        GAWTC TfiI 758 167 75
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00270769
    Transcript: CBG30805.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG30805.1:c.449T>G
        HGVSp: CBP45429.1:p.Val150Gly
        cDNA_position: 455
        CDS_position: 449
        Protein_position: 150
        Exon_number: 4/8
        Codon_change: gTc/gGc
        Amino_acid_change: V/G
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP