WormBase Tree Display for Variation: WBVar00116357
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| WBVar00116357 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00116357 | ||||
| Other_name | cbs51878 | |||||
| HGVSg | chrX:g.12685454A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
| Flanking_sequences | ggattggatttcgctactagcatgaaaatcccggaatccatgaagccagc | aaaacgatcaagaaggaactcgctgcctctccagattccagtaagtcctg | ||||
| Mapping_target | cb25.fpc2397 | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | AGCT | AluI | 801 199 | ||
| GCNNGC | BstC8I, Cac8I | 504 496 | ||||
| RGCY | CviJI, CviTI | 316 218 178 113 89 86 | ||||
| CAC | HindI | 211 191 88 69 68 63 46 39 34 27 27 26 23 22 19 16 15 11 3 2 | ||||
| AAGCTT | HindIII | 1000 | ||||
| GANTC | HinfI | 483 413 53 51 | ||||
| TCNNGA | Hpy178III, Hpy188III | 310 153 150 143 143 63 22 16 | ||||
| TCNGA | Hpy188I | 429 336 124 111 | ||||
| GAWTC | TfiI | 483 413 53 51 | ||||
| Polymorphic_strain_digest | AGCT | AluI | 424 377 199 | |||
| GCNNGC | BstC8I, Cac8I | 1000 | ||||
| RGCY | CviJI, CviTI | 316 218 113 108 89 86 70 | ||||
| CAC | HindI | 211 104 88 69 68 63 46 46 41 39 34 27 27 26 23 22 19 16 15 11 3 2 | ||||
| AAGCTT | HindIII | 578 422 | ||||
| GANTC | HinfI | 483 413 104 | ||||
| TCNNGA | Hpy178III, Hpy188III | 310 153 150 143 143 63 29 9 | ||||
| TCNGA | Hpy188I | 765 124 111 | ||||
| GAWTC | TfiI | 483 413 104 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00032213 | ||||
| Transcript | CBG10997a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG10997a.1:c.879A>C | |||||
| HGVSp | CBP44284.1:p.Ala293%3D | |||||
| cDNA_position | 1732 | |||||
| CDS_position | 879 | |||||
| Protein_position | 293 | |||||
| Exon_number | 7/12 | |||||
| Codon_change | gcA/gcC | |||||
| Amino_acid_change | A | |||||
| CBG10997b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG10997b.1:c.879A>C | |||||
| HGVSp | CBP42244.1:p.Ala293%3D | |||||
| cDNA_position | 1732 | |||||
| CDS_position | 879 | |||||
| Protein_position | 293 | |||||
| Exon_number | 7/10 | |||||
| Codon_change | gcA/gcC | |||||
| Amino_acid_change | A | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
