WormBase Tree Display for Variation: WBVar00116376
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WBVar00116376 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00116376 | ||||
Other_name | cbs51897 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
Flanking_sequences | ttgggagctctgcccctctttaagtgaatcttcaaagtcagaaaacacac | cgaagcaggaaaaataaaaagggaggagaataagaaatgaaaagcaaaag | ||||
Mapping_target | cb25.fpc2397 | |||||
Type_of_mutation | Substitution | A | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CTAG | BfaI, MaeI, XspI | 633 159 147 61 | ||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 593 407 | ||||
CAC | HindI | 171 72 61 61 60 58 57 50 41 40 37 36 29 27 26 23 21 20 18 17 16 15 10 10 8 4 2 2 2 2 2 2 | ||||
TCTAGA | XbaI | 634 305 61 | ||||
Polymorphic_strain_digest | CTAG | BfaI, MaeI, XspI | 694 159 147 | |||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 505 407 88 | ||||
CAC | HindI | 171 72 63 61 60 58 57 50 41 40 37 36 29 27 26 23 21 20 18 17 16 15 10 10 8 4 2 2 2 2 2 | ||||
TCTAGA | XbaI | 695 305 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |