WormBase Tree Display for Variation: WBVar00116381

WBVar00116381 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00116381
    Other_name: cbs51902
      cb51902 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.12797221C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2397
    Flanking_sequences: acatttttgacctgaaaagttgaaa ctagggattaaatttattcaaaatg
    Mapping_target: cb25.fpc2397
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 500 500
        CCNNGG BsaJI, BseDI, BssECI, SecI 500 500
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 500 500
        GAWTC TfiI 591 409
      Polymorphic_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 1000
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        GAWTC TfiI 591 221 188
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00089204
    Transcript: CBG27790.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG27790.1:c.415-15G>T
        Intron_number: 4/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP