WormBase Tree Display for Variation: WBVar00116384

WBVar00116384 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00116384
    Other_name: cbs51905
    HGVSg: chrX:g.12797547G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2397
    Flanking_sequences: tgagagtctggaaaaaaattattagtaaaaaaactagaactttgaaaaaa gatacatacgccaaagtgatctcatcaaggttccaataactcatttcaac
    Mapping_target: cb25.fpc2397
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 826 174
        CCNNGG BsaJI, BseDI, BssECI, SecI 826 174
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 826 174
        GAWTC TfiI 735 265
      Polymorphic_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 1000
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        GAWTC TfiI 547 265 188
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00089204
    Transcript: CBG27790.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG27790.1:c.212+10C>T
        Intron_number: 2/4
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP