WormBase Tree Display for Variation: WBVar00116385

WBVar00116385 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00116385
    Other_name: cbs51906
    HGVSg: chrX:g.12797569T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2397
    Flanking_sequences: tagtaaaaaaactagaactttgaaaaaaggatacatacgccaaagtgatc catcaaggttccaataactcatttcaacgatcaatactttcagagcctca
    Mapping_target: cb25.fpc2397
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 848 152
        CCNNGG BsaJI, BseDI, BssECI, SecI 848 152
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 848 152
        GAWTC TfiI 757 243
      Polymorphic_strain_digest: CCTAGG AvrII, BlnI, BspA2I, XmaJI 1000
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        GAWTC TfiI 569 243 188
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00089204
    Transcript: CBG27790.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG27790.1:c.200A>G
        HGVSp: CBP28613.1:p.Glu67Gly
        cDNA_position: 200
        CDS_position: 200
        Protein_position: 67
        Exon_number: 2/5
        Codon_change: gAg/gGg
        Amino_acid_change: E/G
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP