WormBase Tree Display for Variation: WBVar00118395
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| WBVar00118395 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00118395 | ||||
| Other_name | cbs53916 | |||||
| cb53916 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.12383173A>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2887c | ||
| Flanking_sequences | gaagactacaaatactacaaagact | caaagacttcaaagacttcaaagac | ||||
| Mapping_target | cb25.fpc2887c | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 532 468 | ||
| ACRYGT | AflIII | 1000 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 649 351 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 375 375 230 20 | ||||
| RGCY | CviJI, CviTI | 230 199 113 109 100 76 76 40 37 20 | ||||
| RGGNCCY | DraII, EcoO109I, PssI | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 483 350 60 47 34 26 | ||||
| CAC | HindI | 238 107 95 83 82 67 64 61 50 37 35 26 16 16 15 3 3 2 | ||||
| Polymorphic_strain_digest | GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 1000 | |||
| ACRYGT | AflIII | 609 391 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 453 351 196 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 375 280 230 95 20 | ||||
| RGCY | CviJI, CviTI | 230 199 109 100 95 76 76 40 37 20 18 | ||||
| RGGNCCY | DraII, EcoO109I, PssI | 532 468 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 359 350 124 60 47 34 26 | ||||
| CAC | HindI | 238 107 98 95 67 64 62 61 50 37 35 26 21 16 15 3 3 2 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00033219 | ||||
| Transcript | CBG12241a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG12241a.1:c.1742+135T>A | |||||
| Intron_number | 10/10 | |||||
| CBG12241b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG12241b.1:c.1643+135T>A | |||||
| Intron_number | 9/10 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
