WormBase Tree Display for Variation: WBVar00118700
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| WBVar00118700 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00118700 | ||||
| Other_name | cbs54221 | |||||
| cb54221 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2888a2 | ||
| Flanking_sequences | gagcccccaacgaccatttatccgaaagaacaaggttcggagaatacgat | agtgcagtagaataattcagccaaacgacatgaaattttagctgaccagt | ||||
| Mapping_target | cb25.fpc2888a2 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 1000 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 777 223 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 454 323 223 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 454 323 223 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 775 225 | ||||
| CAC | HindI | 113 102 98 90 84 77 76 68 67 51 46 35 34 29 14 8 6 2 | ||||
| TCNGA | Hpy188I | 317 283 155 152 77 16 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 156 125 119 98 96 94 92 70 42 42 22 20 12 7 5 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 745 255 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 546 454 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 546 454 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
| CAC | HindI | 160 113 102 98 90 77 68 67 51 46 35 34 29 14 8 6 2 | ||||
| TCNGA | Hpy188I | 435 317 155 77 16 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 156 125 110 98 96 94 92 70 42 42 22 20 12 9 7 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
