WormBase Tree Display for Variation: WBVar00118726
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WBVar00118726 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00118726 | |||
Other_name | cbs54247 | ||||
HGVSg | chrI:g.9657952G>A | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2888a2 | |
Flanking_sequences | tctattggagtgtttatggcaatgatgtcattcaaaatgtttctacattt | aactcggaatgttcaaaatatttggacttttttgaatactcatgatgttt | |||
Mapping_target | cb25.fpc2888a2 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | Reference_strain_digest (14) | ||||
Polymorphic_strain_digest (14) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00033536 | |||
Transcript | CBG12618a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG12618a.1:c.613-369C>T | ||||
Intron_number | 6/9 | ||||
CBG12618b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG12618b.1:c.649-369C>T | ||||
Intron_number | 7/10 | ||||
CBG12618c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG12618c.1:c.78+158C>T | ||||
Intron_number | 2/5 | ||||
Reference | WBPaper00030778 | ||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |